Quick & Helpful Slurm Commands

In the lab I work in, we have access to a High Performance Computing (HPC) environment that uses the Slurm Workload Manager.

I've been using it for a while now, and I've found a few commands that I use all the time. I thought I'd share them here in case they're useful to anyone else.

Checking Job Status

# View all jobs
squeue
# Check the status of just your jobs
squeue -u <username>
# Check the status of jobs with a specific QOS
squeue -q <QOS>

Cancelling Jobs

# Cancel a specific job
scancel <job_id>
# Cancel all your jobs
scancel -u <username>

Requesting a Node Interactively

# Requesting a single node (this will open it up interactively in your terminal)
# When you exit the terminal, the node will be reallocated
salloc --nodes=1 --gpus=8 --qos=<QOS> --mem=2000G --time=72:00:00 --ntasks=1 --cpus-per-task=128

Submitting a Job

What if all of your compute nodes are allocated, or you don't want your job to exit as soon as your terminal connection is closed? In that case, you can use sbatch to submit a job to the queue. It will automatically run as soon as it can allocate the resources.

This will take slightly more setup. Assume that the job we actually want to run is contained in myjob.sh. In order to submit that script as a job, we'll first create a Bash script that will be run by Slurm. Let's call it run.sh:

#!/bin/bash
#SBATCH -J "JOBNAME"
#SBATCH --nodes=1
#SBATCH --gpus-per-node=8
#SBATCH --cpus-per-task=128
#SBATCH --mem=2000G
#SBATCH --time=72:00:00
#SBATCH --qos=<QOS>
 
srun --nodes=1 myjob.sh

Note that we're using the #SBATCH processing directive to pass in the parameters that we would have passed to salloc before. We're also using srun to run our actual job; it will handle running the script across multiple nodes, if we so desire.

Finally, to launch our script, we'll run:

sbatch run.sh

Conclusion

That's it! I hope this was helpful. If you have any questions, you can ask ChatGPT or Bard (they'll give either incredibly helpful or completely incorrect answers, but it's worth a shot!)

You can also look through the Slurm documentation or the Leo's notes page on Slurm for more information.

If you liked this article, don't forget to share it and follow me at @nebrelbug on X!